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Thanks - I solved it in the end with this:
(insert this indicator into a new blank pane)
a = 0;
Plot(a,"",colorWhite);	// This creates enough chart space for the 
rectangles
SetChartOptions(0,chartShowArrows|chartShowDates|chartWrapTitle);
Plot( C, "Close", ParamColor("Color", colorBlack ), styleNoTitle | 
ParamStyle("Style") | GetPriceStyle() );
PlotShapes(shapeSquare,IIf(myVar==1,colorGreen,colorRed),0,0.5,0);
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